Visualization module#

pyneon.vis.plot_frame(video: NeonVideo, index: int = 0, ax: Axes | None = None, auto_title: bool = True, show: bool = True)#

Plot a frame from the video on a matplotlib axis.

Parameters:

  • video (NeonVideo) – Video object to plot the frame from.

  • index (int) – Index of the frame to plot.

  • ax (matplotlib.pyplot.Axes or None) – Axis to plot the frame on. If None, a new figure is created. Defaults to None.

  • auto_title (bool) – Whether to automatically set the title of the axis. The automatic title includes the video file name and the frame index. Defaults to True.

Returns:

  • fig (matplotlib.pyplot.Figure) – Figure object containing the plot.

  • ax (matplotlib.pyplot.Axes) – Axis object containing the plot.

pyneon.vis.plot_distribution(rec: NeonRecording, heatmap_source: Literal['gaze', 'fixations', None] = 'gaze', scatter_source: Literal['gaze', 'fixations', None] = 'fixations', step_size: int = 10, sigma: Number | None = 2, width_height: tuple[int, int] = (1600, 1200), cmap: str | None = 'inferno', ax: Axes | None = None, show: bool = True)#

Plot a heatmap of gaze or fixation data on a matplotlib axis. Users can flexibly choose to generate a smoothed heatmap and/or scatter plot and the source of the data (gaze or fixation).

Parameters:

  • rec (NeonRecording) – Recording object containing the gaze and video data.

  • heatmap_source ({'gaze', 'fixations', None}) – Source of the data to plot as a heatmap. If None, no heatmap is plotted. Defaults to ‘gaze’.

  • scatter_source ({'gaze', 'fixations', None}) – Source of the data to plot as a scatter plot. If None, no scatter plot is plotted. Defaults to ‘fixations’. Gaze data is typically more dense and thus less suitable for scatter plots.

  • step_size (int) – Size of the grid cells in pixels. Defaults to 10.

  • sigma (float or None) – Standard deviation of the Gaussian kernel used to smooth the heatmap. If None or 0, no smoothing is applied. Defaults to 2.

  • width_height (tuple[int, int]) – If video is not available, the width and height of the scene camera frames to specify the heatmap dimensions. Defaults to (1600, 1200).

  • cmap (str or None) – Colormap to use for the heatmap. Defaults to ‘inferno’.

  • ax (matplotlib.pyplot.Axes or None) – Axis to plot the frame on. If None, a new figure is created. Defaults to None.

  • show (bool) – Show the figure if True. Defaults to True.

Returns:

  • fig (matplotlib.pyplot.Figure) – Figure object containing the plot.

  • ax (matplotlib.pyplot.Axes) – Axis object containing the plot.

pyneon.vis.plot_scanpath_on_video(video: NeonVideo, scanpath: DataFrame, circle_radius: int = 10, line_thickness: int | None = 2, max_fixations: int = 10, show_video: bool = False, video_output_path: Path | str | None = 'scanpath.mp4') → None#

Plot scanpath on top of the video frames. The resulting video can be displayed and/or saved.

Parameters:

  • video (NeonVideo) – Video object to overlay the fixations on.

  • scanpath (pandas.DataFrame) – DataFrame containing the fixations and gaze data.

  • circle_radius (int) – Radius of the fixation circles in pixels. Defaults to 10.

  • line_thickness (int or None) – Thickness of the lines connecting fixations. If None, no lines are drawn. Defaults to 2.

  • max_fixations (int) – Maximum number of fixations to plot per frame. Defaults to 10.

  • show_video (bool) – Whether to display the video with fixations overlaid. Defaults to False.

  • video_output_path (pathlib.Path or str or None) – Path to save the video with fixations overlaid. If None, the video is not saved. Defaults to ‘scanpath.mp4’.